Transcriptomic profiles of mycobacteriophage D29, L5 and StarStuff
Internal Dataset

UID: 24

Author(s): Hatfull, Graham F.+, Dedrick, Rebekah M.*+, Mavrich, Travis N.+, Garlena, Becky+ * Corresponding Author + University of Pittsburgh Author
This dataset contains twelve high throughput sequenced gene expression profiles of mycobacterium smegmatis infected with (1) mycobacteriophage D29 at 15min, 30min, 60min, and 150min, (2) mycobacteriophage StarStuff itself and at 15min, 30min, 60min, and 150min, and (3) mycobacteriophage L5 itself and at 30min and 150 min. Total RNA was isolated, depleted of rRNA, and library prepped.
Subject of Study
Access via NCBI GEO

Expression profiling by high throughput sequencing.
Accession #: GSE99182

Access via SRA

Raw data for 12 samples.
Accession #: SRP107805

Access via BioProject

Overall project information and data.
Accession #: PRJNA387480

Access Restrictions
Free to all
Access Instructions
The NCBI Gene Expression Omnibus, Sequence Read Archive, and BioProject databases provide open access to these files.
Associated Publications
Data Type
Equipment Used
Illumina MiSeq
Software Used
SeaView 4
Dataset Format(s)
SOFT (.soft), MINiML (.miniml, .xml), TXT (.txt)
Resource Type(s)
Grant Support
HHMI 54308198/Howard Hughes Medical Institute
NSF1247842/National Science Foundation
Data Catalog Record Updated

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